Some further questions
- you say factory alarm is being triggered - what happens, the OEM horns sound? Lights flicker (factory alarm horns are disconnected)
- Does this do this EVERY time you disarm the Clifford (you said 'disable' - I assume you meant disarm - please correct me if I misunderstood your intent) For now it has been intermittent...yep, I meant disarm
- Does it alarm as soon as you disarm the Clifford, or only when you open the door? when I disarm the alarm
- when you 'arm' the system with the Clifford remote, does the "Security" indicator on the door flash? (indicating OEM alarm is armed also) No
- Is there by chance an OEM keyless entry module still installed? If so try removing that. (I can only assume the OEM keyless entry uses similar technique as I did to latch into the alarm system via the key input - the lock position itself has no bearing on arming the OEM alarm system.) How do I remove it.