I'm not Drag Strip Expert, nor I've been one since I don't really care for drag racing, anyway, there's some of the reason you have a slower car after the exhaust/ header installation.
The Reset ECU thing could have been a reason, but since you are driving in 60 degrees, I wouldn't think it would matter much.
Now I suspect the best time you obtained before your H/E installation would probably couple months ago, right?
The tires could have been worn a little, thus not gripping as good as before... In same theory, the pavement could have been different ie, some guy who ran before you put some tacky tire compound on the pavement thus increase your traction of the tire which gave you a better time... It could be the other way around, like I said I'm no expert on the 1340 ft...
Now talking about the removing seat, I would say the seat at least weight more than 50 lbs... which your exhaust weight saving is not even close to that, thus you have a lighter weight to get a better accelaration.
Also, when you remove the seat, you were taking weight off from the center of the front and rear wheels... while the Exhaust removing weight "behind" the rear wheels. I believed more weight you carried at the rear gives you better traction/acceleration. (That's what the Porsche guys said.)
just my opinion.