I plan to do the exact same thing, and will be using this unit.
http://www.reqsound.com/
It takes the factory signal, and rebalances it to more of an aftemarket sound....it outputs RCAs for fronts, rears, subs, etc.
It also has an aux input jack, which is perfect for ipod sound input. There is a little volume control for the jack input, since the signal enters the system "After" your head unit....the volume control is a little knob connected via wire like a phone cable. I had this in my sons charger for a while prior to him going aftermarket head unit....sounded excellent.
So , I plan to use in the NSX. I did have a question though? When you look at the wiring schematic for the NSX Bose system, it indicates there is a lead out for Driver and passenger door speakers, but also a Driver and Passenger side footwell speaker (is this the leads for the sub?)
Meaning,... is the Driver and Pass side "output speaker lead from the Bose head unit" a High pass frequency range?....and the Footwell speaker leads from the HU a Low Frequency lead?....or are they both full range? this is important to know, because from what I can see, the SOS harness only taps into the Door speaker output leads....and unless they are full frequency range, with bass included, those leads will only be high pass.....is there anyone who knows for sure the frequencies that are coming out of these four leads?