OK, so I went to take a look today. The scratch on the roof is small and has been touched up. It is on the passenger side, at the extreme rear/passenger corner of the top. But it does have a little touch up paint on it, and really isn't that bad at all.
I'm not sure what redyang saw wrong with the top, regarding the seals/fit of it. I didn't notice anything, even with the intention of going there just to check that point out. I looked over the entire top and put a little muscle into seeing if there may be any abnormal play.. there was none. I do not see it being an issue.
There is a small rock chip sized chip in the paint inside of the door handle area of the A pillar, which you cannot see when the door is closed.. Looks possibly like someone had a key in their hand when they reached to pull on the door handle. Then there are two similar(very small) sized chips on the edge of the scoop area of the door, that have both been touched up with a darker red touch up paint. Other then these points, and these are all very minor, this car is very clean.
And about the Red/Tan, I actually liked it.
BTW, they added a 2 year 100k mile warranty to the car today as well. He also noted they did the 30k service on it also.
Other then those very small blemishes, I looked over the entire car, and it is in very nice condition. As it should have considering it only has 12k on it. Tires looked close to brand new. I didn't talk to him about price, but thats between you and the dealer.
If there is anything else you would like to know, that I did not cover, don't hesitate to ask.