Ok, here's what we're looking at:
Note the small pipe conjoined to large pipe #21, that's going TO the heater if I recall correctly. Then note the small pipe stub sticking up from pipe #20, that's where the coolant returns to the main loop from the heater core. (unless I have the flow backwards, in which case, just reverse the direction).
So it does open up a different path for it to flow. the heater core acts as a small radiator, transferring heat from the coolant to air being blow through the fins of the core, and this of course also reduces the temperature of the coolant as it passes through.
So, it actually does make sense than blower on = cooler tunnel because it's taking heat out of the coolant as it passed through the heater core.