First off, the engine uses a MAP sensor not a MAF sensor, so air leaks into the manifold will not result in lean operation, just high idle speeds (an air leak just looks like a slightly open throttle plat on a MAP system) which the ECU will attempt to correct with the DBW.
The dyno runs would normally be done at WOT. Typically the ECU is running open loop (no correction from the O2 sensors) under those conditions. The AFRs that you measure in a dyno run are not an indication of what the AFRs are at other operating points. You said the engine is stock. Does that mean the CTSC is no longer? Even if you still have the CTSC, unless you have a previous dyno run with which to make a comparison, your WOT AFRs don't seem that bad
My opinion - if your fuel pressure tests out OK, I would not try to fiddle the pressure to alter the AFRs. If you are running an original ECU, when you jack up the fuel pressure to increase the injector flow rate, when the ECU is operating in closed loop it is going to reduce the injector pulse width to try to bring the AFRs back to target. This can lead to things like poor idle if you enter the injectors non linear flow regimen. It can also generate more codes if the ECU can't bring the AFR to target.
You may not have CKP/CMP problem. If you are running lean and getting lean back fires, sometimes the momentary rapid change in RPM can cause the ECU to interpret the RPM changes as a CKP/CMP problem. I have no direct experience with this on the NSX (knock on aluminum - the NSX has never generated a code); but, when my son first got his RSX, his use of the clutch was not always 'smooth'. On one occasion, he did one of those lurch, go, lurch, go, stall moves. On restart, his MIL was lit up. Pulling the code indicated that it was a CKP/CMP problem caused by the RPM fluctuations during his lurch - go moves. Reset the code and the problem never returned - because he worked on his clutch skills. short answer, your CKP/CMP may be just fine and the code you got was a symptom of other problems.
I would focus on fuel delivery first (but leave the fuel pressure alone for now). I could go with a dirty injector; however, if you are getting lean codes on both cylinder banks that means dirty injectors on both banks all of a sudden, which seems odd unless you got into a batch of bad fuel.